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FACULTY Benjamin J. McFarland Curriculum Vitae
Department of Chemistry
Seattle Pacific University
Seattle, WA 98119-1997
(206) 281-2749
bjm@spu.edu
| EDUCATION & GRADUATE RESEARCH |
Fred Hutchinson Cancer Research Center, Division of Basic Sciences.
Cancer Research Institute postdoctoral fellow, 2001-2003.
Advisor: Roland K. Strong.
Research topic: Structural analysis of innate immunity and receptor-ligand interaction kinetics.
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University of Washington, Biomolecular Structure and Design Program, Department of Chemistry.
Ph.D., 1996-2001.
Thesis advisor: Craig C. Beeson.
Research topic: The role of hydrogen bonds in MHC-peptide dissociation kinetics.
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University of Florida, College of Liberal Arts and Sciences and College of Journalism.
Dual B.S. degree, 1992-1996, with honors in Chemistry, with highest honors in Public Relations, specializing in Technical Communications. |
| TEACHING, WRITING, AND OTHER RESEARCH EXPERIENCE |
Teaching Assistant, ENGL 199 technical writing section for third-quarter freshman chemistry, University of Washington (2001). Developed all course materials and taught technical writing to freshman chemistry students in a course linked to their laboratory assignments. Course topics included basic grammar and style, the scientific method, writing for different audiences, and ethics, culminating in a mock grant proposal.
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Teaching Assistant, BIOC 462 and 429 biochemistry laboratory and lecture courses, University of Washington (1997-1998). Lectured and taught biotechnology techniques to seniors. Laboratory exercises focused on spectroscopic techniques for studying enzyme kinetics. Also taught technical writing technique and graded lab reports for writing.
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Teacher, Bethany Community Church adult education courses (2000-2003). Developed and taught four quarter-long weekly courses on the Psalms, the ethics of the New Testament, Christian responses to violence, and church and state before the 20th century.
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Bible Study Leader, “Poiema” Gathering, Bethany Community Church (1999-present). Developed and taught exegesis of passages ranging from Genesis to 1 John. Also led college-group discussions of books by Eugene Peterson, Sheldon Vanauken, and David Needham. Additional experience teaching 1st-6th grade children.
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Editorial Assistant, Reviews of Modern Physics (1999-2001). Copyedited physics manuscripts and corresponded with authors regarding publication.
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Education Volunteer, Seattle Opera (1999-2003). Assisted with pre-opera lectures.
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Assistant to the Director, Florida Museum of Natural History (1994-1996). Published research on science history in 1840s Philadelphia, prepared a proposal for an exhibit on naturalist Mark Catesby, and wrote articles for the museum.
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Research Assistant, University of Florida Department of Chemistry (1994). Synthesized organic compounds for physical chemistry studies.
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Software Systems Intern, McDonnell Douglas Space Systems (1992). Assembled relational database for procurement and wrote documentation.
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| SELECTED AWARDS, FELLOWSHIPS, AND MEMBERSHIPS |
American Association of Immunology Member (2004-present)
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Cancer Research Institute Postdoctoral Fellow (2001-2003)
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NIH Molecular Biophysics Training Grant Trainee (1997-2000)
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American Chemical Society Member (1999-present)
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Seven undergraduate scholarships (1992-1996)
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Anderson Scholar of High Distinction (1994) |
University of Florida Speech and Debate Team, advanced to national tournament (1994)
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Celebration! Anthology, first place poetry (1992) |
| RESEARCH PUBLICATIONS |
Strong, R.K., and B.J. McFarland, in press, “NKG2D and related receptors.” Adv. Prot. Chem.
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McFarland, B.J., and R.K. Strong, 2003, “Thermodynamic analysis of degenerate recognition by the NKG2D immunoreceptor: Not induced fit but rigid adaptation.” Immunity 19: 803-812.
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McFarland, B.J., T. Kortemme, D.A. Baker, and R.K. Strong, 2003, “Symmetry recognizing asymmetry: Analysis of the interactions between the C-type lectin-like immunoreceptor NKG2D and MHC class I-like ligands.” Structure 11: 411-422.
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McFarland, B.J., and C. Beeson, 2002, “ Binding interactions between peptides and proteins of the class II Major Histocompatibility Complex,” Med. Res. Rev . 22:168-203.
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McFarland, B.J., J.F. Katz, C. Beeson, and A.J. Sant, 2001, "Energetic asymmetry among hydrogen bonds in MHC Class II:peptide complexes," Proc. Natl. Acad. Sci. (US) 98: 9231-6.
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Sant, A.J., C. Beeson, B. McFarland, J. Cao, S. Ceman, P.W. Bryant, and S. Wu, 1999, “Individual hydrogen bonds play a critical role in MHC Class II:peptide interactions: implications for the dynamic aspects of class II trafficking and DM-mediated peptide exchange ,” Immun. Rev. 172: 239-253.
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McFarland, B.J., A.J. Sant, T.P. Lybrand, and C. Beeson, 1999, “Ovalbumin(323-339) peptide binds to the Major Histocompatibility Complex Class II I-A d protein using two functionally distinct registers,” Biochemistry 38: 16663-16670.
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McFarland, B.J., A.J. Sant, and C. Beeson, 1999, “Identification of two distinct structural transitions in the dissociation of peptides from Class II proteins of the Major Histocompatibility Complex,” J. Am. Chem. Soc. 121: 11225-11226.
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McFarland, B.J., C. Beeson, and A.J. Sant, 1999, “Cutting edge: a single, essential hydrogen bond controls the stability of peptide-MHC Class II complexes,” J. Immunol. 163: 3567-3571.
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McFarland, B.J., and T.P. Bennett, 1997, "The Image of Edgar Allan Poe: A Daguerreotype Linked to the Academy of Natural Sciences of Philadelphia ,” Proc. Acad. Nat. Sci. Phil. 147: 1-32.
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Weimer, H.A., B.J. McFarland, S. Li, and W. Weltner, Jr., 1995, “Infrared Observation of 2,3-Didehydrogenated Naphthalene (2,3-Naphthyne) in Inert Gas Matrices at 4K,” J. Phys. Chem. 99: 1824-1825.
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(Plus 15 articles for general audiences published in newspapers, newsletters, and trade journals.) |
| PRESENTATIONS |
“The Role of Conformational Flexibility and Energetic ‘Hot Spots' in the Interaction of the NKG2D Immunoreceptor with its Ligands.” Lecture, June 2002 7th Annual Northwest Crystallography Workshop, Vancouver, BC, Canada.
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“The MHC II mystery revealed: How to bind thousands of different peptides with sub-nanomolar affinities.” Lecture, February 2001 Volcano Conference, Pack Forest, WA.
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“Individual hydrogen bonds play a critical role in MHC Class II: peptide interactions: Implications for the dynamic aspects of Class II:peptide interactions and DM-mediated peptide exchange.” Poster, May 2000 AAI national meeting, Seattle, WA.
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“Disparate apparent strengths for structurally equivalent hydrogen bonds in a peptide-MHC complex.” Poster, Spring 2000 ACS national meeting, San Francisco, CA.
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“Two distinct structural transitions in peptide dissociation from MHC Class II proteins.” Poster, Spring 1999 FASEB Biochemistry and Molecular Biology; San Francisco, CA.
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“The structural basis for kinetic stability of peptides ... .” Lecture, 53rd ACS Northwest Regional Meeting (NORM '98); Pasco, WA. |
| RESEARCH SKILLS AND INSTRUMENTAL METHODS |
Standard molecular biology techniques (e.g., PCR, agarose gels, DNA manipulation), mammalian tissue culture (TC) techniques, standard protein analysis techniques (e.g., silver-stained SDS-PAGE, His-tag purification, BCA assay, antibody binding analysis), surface plasmon resonance measurement of protein interaction kinetics (two levels of BIAcore training), X-ray crystallography, size-exclusion/reverse-phase/ion-exchange HPLC/FPLC, electrospray mass spectrometry, bacterial protein expression systems, protein purification, molecular modeling, peptide synthesis, chemical labeling of peptides and proteins, site-directed mutagenesis, technical writing, copyediting, and proofreading. |
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